SOFT : AGC
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Site du soft: https://github.com/refresh-bio/agc
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/AGC
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Load binaries and environment:
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-> Version v3.2.1

#Need gcc-12.2.0
module load compilers/gcc/12.2.0

#Need python-3.11.1
module load devel/python/Python-3.11.1

module load bioinfo/AGC/3.2.1

#Warning! By default 64 cpus are used on the node. Don't forget to adjust  -t option of agc command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/AGC/example_on_cluster

To submit: sbatch test_agc-v3.2.1.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.