SOFT : ALLHiC
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Site du soft: https://github.com/tangerzhang/ALLHiC
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LICENSE:
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BSD

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ALLHiC
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Load binaries and environment:
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-> Version v0.9.13 (ffaa10e)

#Need Python3, samtools, bedtool
module load devel/python/Python-3.11.1 bioinfo/samtools/1.14 bioinfo/bedtools/2.27.1

module load bioinfo/ALLHiC/0.9.13

Example directory for use on cluster:
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/usr/local/bioinfo/src/ALLHiC/example_on_cluster

To submit: sbatch test_ALLHiC-v0.9.13.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.