SOFT : ANNEVO
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Site du soft: https://github.com/xjtu-omics/ANNEVO
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LICENSE:
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Free for non-commercial use. See https://github.com/xjtu-omics/ANNEVO?tab=License-1-ov-file

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ANNEVO
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Load binaries and environment:
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-> Version v2.2.3

module load devel/Miniforge/Miniforge3
module load bioinfo/ANNEVO/2.2.3

To unload module, unload  in order:

module unload bioinfo/ANNEVO/2.2.3
module unload devel/Miniforge/Miniforge3

#Need GPU. To submit on gpuq, see FAQ:  https://vm-genoword.toulouse.inrae.fr/FAQ/faq/job-submission/#how-to-use-gpu-node -> How to use GPU node

Path to ANNEVO Models: /usr/local/bioinfo/src/ANNEVO/ANNEVO-v2.2.3/ANNEVO_model/

Warning! By default 48 cpus are used on the node. Don't forget to adjust  --threads option of annotation.py and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/ANNEVO/example_on_cluster

To submit: sbatch test_ANNEVO-v2.2.3.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.