SOFT : AlphaFold
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Site du soft: https://github.com/deepmind/alphafold (install via  https://github.com/kalininalab/alphafold_non_docker)
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LICENSE:
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Apache-2.0 license

See software documentation for more informations.

Location: /usr/local/bioinfo/src/AlphaFold
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Load binaries and environment:
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-> Version v2.3.1

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/AlphaFold/2.3.1

To unload module, unload  in order:

module unload bioinfo/AlphaFold/2.3.1
module unload devel/Miniconda/Miniconda3

-> Version v2.3.2

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/AlphaFold/2.3.2

To unload module, unload  in order:

module unload bioinfo/AlphaFold/2.3.2
module unload devel/Miniconda/Miniconda3


#Need GPU. To submit on gpuq, see FAQ: https://bioinfo.genotoul.fr/index.php/faq/job_submission_faq/ -> How to use GPU node

Warning! By default all cpu are used by OpenMM on the node. Don't forget to adjust -n and --cpus-per-task option for Slurm.

AlphaFold database path: /work/user/software/AlphaFold/full_dbs/

Example directory for use on cluster:
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/usr/local/bioinfo/src/AlphaFold/example_on_cluster

To submit: sbatch test_alphafold-2.3.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.