SOFT : Arriba
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Site du soft: https://github.com/suhrig/arriba
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LICENSE:
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MIT/Expat License

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Arriba
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Load binaries and environment:
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-> Version v2.4.0

#Need STAR >=2.7.10a recommended
module load bioinfo/STAR/2.7.10b

#If need R and samtools
module load statistics/R/4.2.2 

module load bioinfo/Arriba/2.4.0

Warning! By default 8 cpu are used on the node. Don't forget to adjust run_arriba.sh and download_references.sh scripts and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Arriba/example_on_cluster

To submit: sbatch test_arriba_v2.4.0.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.