SOFT : BRAKER
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Site du soft: http://bioinf.uni-greifswald.de/bioinf/braker/index.html
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LICENSE:
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Artistic Licence. See https://github.com/Gaius-Augustus/BRAKER#licence

See software documentation for more informations.

Location: /usr/local/bioinfo/src/BRAKER
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Load binaries and environment:
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-> Version v2.0.4

#Need gcc-12.2.0 for Augustus-3.3.1
module load compilers/gcc/12.2.0

#Load Braker, Bamtools, Augustus, Samtools, Genemark, GenomeThreader and Blast path
module load bioinfo/BRAKER/2.0.4

-> Version v2.1.6 (load Braker, Bamtools, Augustus, Samtools, Genemark, GenomeThreader and Blast path ..)


module load bioinfo/BRAKER/2.1.6

-> Version v3.0.3

#Need Python-3.6.3 
module load devel/python/Python-3.6.3 

module load bioinfo/BRAKER/3.0.3

-> Version v3.0.7

#Need Python-3.6.3
module load devel/python/Python-3.6.3

module load bioinfo/BRAKER/3.0.7


#To use Genemark-ET:
#Copy key in your home (or create symlink)
cp /usr/local/bioinfo/src/GeneMark/gm_key ~/.gm_key or ln -s /usr/local/bioinfo/src/GeneMark/gm_key ~/.gm_key



Example directory for use on cluster:
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/usr/local/bioinfo/src/BRAKER/example_on_cluster

To submit: sbatch test_BRAKER_v2.0.4.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.