SOFT : Bakta
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Site du soft: https://github.com/oschwengers/bakta
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Bakta
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Load binaries and environment:
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-> Version v1.8.2

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/Bakta/1.8.2

To unload module, unload  in order:

module unload bioinfo/Bakta/1.8.2
module unload devel/Miniconda/Miniconda3

Default BAKTA_DB (/usr/local/bioinfo/src/Bakta/bakta-v1.8.2/db/db/) is defined in the module.

-> Version v1.9.2

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/Bakta/1.9.2

To unload module, unload  in order:

module unload bioinfo/Bakta/1.9.2
module unload devel/Miniconda/Miniconda3

Default BAKTA_DB (/usr/local/bioinfo/src/Bakta/bakta-v1.9.2/db/db/) is defined in the module.



Warning! By default all cpu are used on the node. Don't forget to adjust --threads option of bakta command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Bakta/example_on_cluster

To submit: sbatch test_bakta-v1.8.2.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.