SOFT : Beagle
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Site du soft: https://faculty.washington.edu/browning/beagle/beagle.html
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Beagle
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Load binaries and environment:
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-> Version v4.1

module load bioinfo/Beagle/4.1

java -Xmx4g -jar $BEAGLE ...
or use absolute path
java -Xmx4g -jar /usr/local/bioinfo/src/Beagle/Beagle_v4.1/beagle.27Jan18.7e1.jar ...


-> Version v4.0

module load bioinfo/Beagle/4.0

java -Xmx4g -jar $BEAGLE ...
or use absolute path
java -Xmx4g -jar /usr/local/bioinfo/src/Beagle/Beagle_v4.0/beagle.r1399.jar ...

-> Version v5.4

 module load bioinfo/Beagle/5.4

java -Xmx4g -jar $BEAGLE ...
or use absolute path
java -Xmx4g -jar /usr/local/bioinfo/src/Beagle/Beagle_v5.4/beagle.22Jul22.46e.jar ...

-> Version v5.5

 module load bioinfo/Beagle/5.5

java -Xmx4g -jar $BEAGLE ...
or use absolute path
java -Xmx4g -jar /usr/local/bioinfo/src/Beagle/Beagle_v5.5/beagle.27Feb25.75f.jar ...


Example directory for use on cluster:
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/usr/local/bioinfo/src/Beagle/example_on_cluster

To submit: sbatch test_Beagle_v4.0.sh
or for version 4.1: sbatch test_Beagle_v4.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.