SOFT : Bismark
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Site du soft: https://www.bioinformatics.babraham.ac.uk/projects/bismark/
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Bismark
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Load binaries and environment:
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-> Version v0.24.0

#Need Bowtie2 or Hisat2, samtools
module load bioinfo/bowtie/2.5.1 bioinfo/HISAT2/2.2.1 bioinfo/samtools/1.14

module load bioinfo/Bismark/0.24.0

-> Version 0.24.2

#Need Bowtie2 or Hisat2, samtools
module load bioinfo/bowtie/2.5.4 bioinfo/HISAT2/2.2.1 bioinfo/samtools/1.21

module load bioinfo/Bismark/0.24.2


Example directory for use on cluster:
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/usr/local/bioinfo/src/Bismark/example_on_cluster

To submit: sbatch test_Bismark-0.24.0.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.