SOFT : BlobTools
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Site du soft: https://github.com/blobtoolkit/blobtoolkit (and https://github.com/DRL/blobtools for v1.1.1)
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/BlobTools
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Load binaries and environment:
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-> Version v1.1.1

module load bioinfo/BlobTools/1.1.1

-> Version v4.3.0

module load bioinfo/BlobTools/4.3.0

-> Version v4.4.2 (need singularity/apptainer)

#Need Apptainer
module load containers/Apptainer/1.2.5

module load bioinfo/BlobTools/4.4.2

apptainer run -B your_working_directory  -B /usr/local/bioinfo/src/BlobTools/blobtoolkit-v4.4.2/databases:/blobtoolkit/databases $BLOB_HOME/blobtoolkit.sif blobtools....

Databases: /usr/local/bioinfo/src/BlobTools/blobtoolkit-v4.4.2/databases/
Databases Genotoul Bioinfo (provided by user): /usr/local/bioinfo/src/BlobTools/blobtoolkit-v4.4.2/databases/genotoul_bioinfo

Example directory for use on cluster:
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/usr/local/bioinfo/src/BlobTools/example_on_cluster

To submit: sbatch test_blobtoolkit-v4.3.0.sh i

Singularity use:

/usr/local/bioinfo/src/BlobTools/example_on_cluster/blobtoolkit-v4.4.2

To submit: sbatch test_blobtoolkit-v4.4.2.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.