SOFT : CAMISIM
------

Site du soft: https://github.com/EBI-Metagenomics/emg-viral-pipeline
-------------

LICENSE:
--------

Apache-2.0

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CAMISIM
---------

Load binaries and environment:
------------------------------

-> Version v1.3

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/CAMISIM/1.3

To unload module, unload  in order:

module unload bioinfo/CAMISIM/1.3
module unload devel/Miniconda/Miniconda3

Les binaires samtools fournis de fonctionnement pas. Utiliser le samtool installé dans l'environnement conda par exemple: /usr/local/bioinfo/src/Miniconda/Miniconda3/envs/CAMISIM-v1.3_env/bin/samtools

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/CAMISIM/example_on_cluster

To submit: sbatch test_CAMISIM-v1.3.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.