SOFT : CHEUI
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Site du soft: https://github.com/comprna/CHEUI
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LICENSE:
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Free for non commercial use. Academic Public License.

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CHEUI
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Load binaries and environment:
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-> Version c1c9ab6

#Need gcc-7.2.0
module load compilers/gcc/7.2.0

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/CHEUI/c1c9ab6

To unload module, unload  in order:

module unload bioinfo/CHEUI/c1c9ab6
module unload devel/Miniconda/Miniconda3

kmer_models path :/usr/local/bioinfo/src/CHEUI/CHEUI-c1c9ab6/kmer_models/
CHEUI_trained_models path: /usr/local/bioinfo/src/CHEUI/CHEUI-c1c9ab6/CHEUI_trained_models

#Need GPU. To submit on gpuq, see FAQ: https://bioinfo.genotoul.fr/index.php/faq/job_submission_faq/ -> How to use GPU node

Warning! By default all cpu are used on the node. Don't forget to adjust -t option of ReLERNN commands and --cpus-per-task option for Slurm. 

Example directory for use on cluster:
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/usr/local/bioinfo/src/CHEUI/example_on_cluster

To submit: sbatch test_CHEUI-c1c9ab6.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.