SOFT : CIRCexplorer2
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Site du soft: https://github.com/YangLab/CIRCexplorer2
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LICENSE:
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Free without restriction

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CIRCexplorer2
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Load binaries and environment:
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-> Version 2.3.8

module load bioinfo/CIRCexplorer2/2.3.8

Warning:
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This software is now quite old and relies on old software. Some features doesn't work anymore.
For instance, use of tophat/bowtie ends up with errors.
Prefer STAR for alignments.
An extra tool EnsemblGTF_to_ref.pl has been developed to convert correctly Ensembl GTF to GenePred format.

Example directory for use on cluster:
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/usr/local/bioinfo/src/CIRCexplorer2/example_on_cluster

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.