SOFT : Cas-OFFinder
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Site du soft: https://github.com/snugel/cas-offinder
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LICENSE:
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BSD License. See https://github.com/snugel/cas-offinder/blob/develop/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Cas-OFFinder
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Load binaries and environment:
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-> Version v2.4.1

module load bioinfo/Cas-OFFinder/2.4.1

Warning! By default 8 cpu are used on the node. Don't forget to adjust  --cpus-per-task option for Slurm.

#Need GPU: to submit on gpuq, see FAQ: https://vm-genoword.toulouse.inrae.fr/FAQ/faq/job-submission/#how-to-use-gpu-node -> How to use GPU node

Example directory for use on cluster:
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/usr/local/bioinfo/src/Cas-OFFinder/example_on_cluster 

To submit: sbatch test_Cas-OFFinder-v2.4.1-GPU.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.