SOFT : CellRanger
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Site du soft: https://support.10xgenomics.com/single-cell-gene-expression/software/pipelines/latest/what-is-cell-ranger
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LICENSE:
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10x Genomics End User Software License Agreement:
https://support.10xgenomics.com/genome-exome/software/downloads/latest

See software documentation for more informations.

Location: /usr/local/bioinfo/src/CellRanger
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Load binaries and environment:
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-> Version v7.1.0

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/CellRanger/7.1.0

-> Version v9.0.0

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/CellRanger/9.0.0

-> Version v10.0.0

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/CellRanger/10.0.0

-> Version v10.1.0

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/CellRanger/10.1.0


Example directory for use on cluster:
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/usr/local/bioinfo/src/CellRanger/example_on_cluster

To submit: sbatch test_cellranger-7.1.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.