SOFT : Circlator
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Site du soft: https://github.com/sanger-pathogens/circlator
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Circlator
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Load binaries and environment:
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-> Version v1.5.5

#Need bwa, prodigal,samtools, Mummer/canu(1.9) , Spades
module load bioinfo/bwa/0.7.17 bioinfo/Prodigal/2.6.3 bioinfo/samtools/1.20 bioinfo/MUMmer/4.0.0rc1 bioinfo/Canu/1.9 bioinfo/SPAdes/3.15.5_compil

module load bioinfo/Circlator/1.5.5

Example directory for use on cluster:
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/usr/local/bioinfo/src/Circlator/example_on_cluster

To submit: sbatch test_circlator-v1.5.5.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.