SOFT : ContScout
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Site du soft: https://github.com/h836472/ContScout
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ContScout
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Load binaries and environment:
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-> Version 699321b

#Need Singularity
module load containers/singularity/3.9.9

module load bioinfo/ContScout/699321b

singularity exec -B path_to_your_working_dir -B /usr/local/bioinfo/src $CONTSCOUT_HOME/contscout_latest.sif updateDB -h ..
singularity exec -B path_to_your_working_dir -B /usr/local/bioinfo/src $CONTSCOUT_HOME/contscout_latest.sif ContScout -h...

Warning! By default all cpu are used on the node. Don't forget to adjust -c option of ContScout binaries and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/ContScout/example_on_cluster

To submit: sbatch test_ContScout-699321b.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.