SOFT : DeepVariant
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Site du soft: https://github.com/google/deepvariant
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LICENSE:
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BSD-3-Clause

See software documentation for more informations.

Location: /usr/local/bioinfo/src/DeepVariant
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Load binaries and environment:
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-> Version v1.6.1

#Need Singularity
module load containers/singularity/3.9.9

module load bioinfo/DeepVariant/1.6.1

singularity exec --env LC_ALL=C -B path_to_your_working_dir -B /usr/local/bioinfo/src  $DEEP_HOME/deepvariant_1.6.1.sif run_deepvariant ...

Example directory for use on cluster:
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/usr/local/bioinfo/src/DeepVariant/example_on_cluster

To submpit: sbatch test_deepvariant-v1.6.1.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.