SOFT : Dorado
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Site du soft: https://github.com/nanoporetech/dorado
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LICENSE:
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Oxford Nanopore Technologies PLC. Public License, v. 1.0. See https://github.com/nanoporetech/dorado/blob/master/LICENCE.txt

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Dorado
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Load binaries and environment:
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-> Version v0.3.0

module load bioinfo/Dorado/0.3.0

-> Version v0.3.4

module load bioinfo/Dorado/0.3.4

-> Version v0.5.3

module load bioinfo/Dorado/0.5.3

-> Version v0.6.2

module load bioinfo/Dorado/0.6.2

-> Version v0.7.2

module load bioinfo/Dorado/0.7.2

-> Version v0.9.0

module load bioinfo/Dorado/0.9.0


#Need GPU. To submit on gpuq, see FAQ: https://bioinfo.genotoul.fr/index.php/faq/job_submission_faq/ -> How to use GPU node

#Warning! By default all cpu are used on the node. Don't forget to adjust -t option of dorado and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Dorado/example_on_cluster

To submit: sbatch test_dorado-0.3.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.