SOFT : EGAPx
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Site du soft: https://github.com/ncbi/egapx
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LICENSE:
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See https://github.com/ncbi/egapx/blob/main/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/EGAPx
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Load binaries and environment:
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-> Version v0.3.2-alpha

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.2.5

module load bioinfo/EGAPx/0.3.2-alpha

-> Version v0.4.0-alpha

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.4.1

module load bioinfo/EGAPx/0.4.0-alpha

-> Version v0.4.1-alpha

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.4.1

module load bioinfo/EGAPx/0.4.1-alpha

-> Version v0.5.0

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.4.1

module load bioinfo/EGAPx/0.5.0

Bug https://github.com/ncbi/egapx/issues/214 . Offline mode only:  https://github.com/ncbi/egapx?tab=readme-ov-file#offline-mode 

-> Version v0.5.1

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.4.1

module load bioinfo/EGAPx/0.5.1

-> Version v0.5.2

#Need Java, Nextflow, Singularity/Apptainer
module load devel/java/17.0.6 bioinfo/Nextflow/24.10.0 containers/Apptainer/1.4.1

module load bioinfo/EGAPx/0.5.2


Example directory for use on cluster:
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/usr/local/bioinfo/src/EGAPx/example_on_cluster

To submit: sbatch test_egapx-v0.3.2-alpha.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.