SOFT : Foldseek
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Site du soft: https://github.com/steineggerlab/foldseek
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Foldseek
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Load binaries and environment:
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-> Version v10-941cd33

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Foldseek/10-941cd33

To unload module, unload  in order:

module unload bioinfo/Foldseek/10-941cd33
module unload devel/Miniforge/Miniforge3

Warning! By default 4 cpus are used on the node. Don't forget to adjust t option of ntJoin command and --cpus-per-task option for Slurm.

To submit on gpuq, see FAQ: https://bioinfo.genotoul.fr/index.php/faq/job_submission_faq/ -> How to use GPU node

Some database can be found here :  /work/user/software/AlphaFold/

Example directory for use on cluster:
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/usr/local/bioinfo/src/Foldseek/example_on_cluster

To submit: sbatch test_foldseek-v10-941cd33-GPU.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.