SOFT : GINGER
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Site du soft: https://github.com/i10labtitech/GINGER
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GINGER
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Load binaries and environment:
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-> Version v1.0.1

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/GINGER/1.0.1

To unload module, unload  in order:

module unload bioinfo/GINGER/1.0.1
module unload devel/Miniforge/Miniforge3

Path to nextflow.config file example to copy and adapt: /usr/local/bioinfo/src/GINGER/GINGER-v1.0.1/nextflow.config 
Adapt --cpus-per-task to  N_THREAD in  nextflow.config file

nextflow -C path_to_your_nextflow.config run $GINGER_HOME/pipeline/ginger.nf

Example directory for use on cluster:
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/usr/local/bioinfo/src/GINGER/example_on_cluster

To submit: sbatch test_GINGER-v1.0.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.