SOFT : GeneMark
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Site du soft: http://exon.gatech.edu/GeneMark/
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LICENSE:
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No Free. Academic License. See /usr/local/bioinfo/src/GeneMark/GeneMark-v4.71/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/GeneMark
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Load binaries and environment:
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-> Version v4.71

#Copy key in your home (or create symlink)
cp /usr/local/bioinfo/src/GeneMark/gm_key ~/.gm_key (or ln -s /usr/local/bioinfo/src/GeneMark/gm_key ~/.gm_key)

#Load module
module load bioinfo/GeneMark/4.71

#Need Python> 3.3 for GeneMark-EP run mode
module load devel/python/Python-3.11.1

Example directory for use on cluster:
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/usr/local/bioinfo/src/GeneMark/example_on_cluster

To submit: sbatch test_GeneMark-v4.71.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.