SOFT : HiCExplorer
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Site du soft: https://hicexplorer.readthedocs.io/en/latest/index.html
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/HiCExplorer
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Load binaries and environment:
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-> Version v3.7.2

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/HiCExplorer/3.7.2

To unload module, unload  in order HiCExplorer module then Miniconda module:

module unload bioinfo/HiCExplorer/3.7.2
module unload devel/Miniconda/Miniconda3

Warning! Default threads are all cpus on node. Minimum value for the '--thread' parameter is 2. Don't forget to adjust --threads option of tools and --cpus-per-task option of sbatch

Example directory for use on cluster:
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/usr/local/bioinfo/src/HiCExplorer/example_on_cluster

To submit: sbatch test_HiCExplorer-v3.7.2.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.