SOFT : IRFinder
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Site du soft: https://github.com/RitchieLabIGH/IRFinder
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/IRFinder
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Load binaries and environment:
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-> Version v2.0.1

#Need  STAR, samtools,bedtools,minimap2,SUPPA2 (in Python-3.11.1)
module load bioinfo/STAR/2.7.5a bioinfo/samtools/1.20 bioinfo/bedtools/2.27.1 bioinfo/Minimap/2-2.28 devel/python/Python-3.11.1

module load bioinfo/IRFinder/2.0.1

Warning! Default cpu is the number of physical CPU (128). Don't forget to adjust -t option of IRfinder and --cpus-per-task for Slurm

Example directory for use on cluster:
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/usr/local/bioinfo/src/IRFinder/example_on_cluster 

To submit: sbatch test_IRFinder-2.0.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.