SOFT : Jellyfish
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Site du soft: http://www.genome.umd.edu/jellyfish.html
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LICENSE:
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GPL

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Jellyfish
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Load binaries and environment:
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-> Version v1.1.10

module load bioinfo/Jellyfish/1.1.10

-> Version v2.3.0

module load bioinfo/Jellyfish/2.3.0

-> Version v1.1.12

module load bioinfo/Jellyfish/1.1.12

If need bindings to Python:
export PYTHONPATH=/usr/local/bioinfo/src/Jellyfish/jellyfish-2.3.0/lib/python3.11/site-packages/dna_jellyfish/:/usr/local/bioinfo/src/Jellyfish/jellyfish-2.3.0/lib/python3.11/site-packages/:$PYTHONPATH
module load devel/python/Python-3.11.1

Example directory for use on cluster:
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/usr/local/bioinfo/src/Jellyfish/example_on_cluster

To submit: sbatch test_jellyfish-2.3.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.