SOFT : KofamScan
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Site du soft: https://github.com/takaram/kofam_scan
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/KofamScan
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Load binaries and environment:
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-> Version v1.3.0

#Need HMMER >= 3.1
module load bioinfo/HMMER/3.2.1

module load bioinfo/KofamScan/1.3.0

profiles are located into following folder:
/usr/local/bioinfo/src/KofamScan/kofam_scan-v1.3.0/KOfam_202312/profiles/

The default behaviour is to use all

The default configuration tries to launch 8 HMMER processes in parallel: #SBATCH  --cpus-per-task 8
Remark: a folder named "tmp" is created in the same directory than the query file, and is not removed at the end of processing.

Example directory for use on cluster:
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/usr/local/bioinfo/src/KofamScan/example_on_cluster

To submit: sbatch test_kofam_scan-v1.3.0.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.