SOFT : LTR_retriever
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Site du soft: https://github.com/oushujun/LTR_retriever
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/LTR_retriever
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Load binaries and environment:
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-> Version v2.9.0 

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/LTR_retriever/2.9.0

To unload module, unload  in order:

module unload bioinfo/LTR_retriever/2.9.0
module unload devel/Miniforge/Miniforge3


-> Version v2.9.4 (bug signalé: https://github.com/oushujun/LTR_retriever/issues/153)

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/LTR_retriever/2.9.4

To unload module, unload  in order:

module unload bioinfo/LTR_retriever/2.9.4
module unload devel/Miniconda/Miniconda3

-> Version v2.9.5 (correction bug 2.9.4)

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/LTR_retriever/2.9.5

To unload module, unload  in order:

module unload bioinfo/LTR_retriever/2.9.5
module unload devel/Miniconda/Miniconda3



Warning! Default cpu:4. Don't forget to adjust  -t for LTR_retriever and --cpus-per-task for Slurm

Example directory for use on cluster:
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/usr/local/bioinfo/src/LTR_retriever/example_on_cluster

To submit: sbatch test_LTR_retriever-v2.9.4.sh (no dataset found, so just help option)

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.