SOFT : MAKER
------

Site du soft: https://www.yandell-lab.org/software/maker.html
-------------

LICENSE:
--------

MAKER is available for academic use under either the Artistic Lscense
2.0 developed by the Perl Foundation or the GNU General Public License
developed by the Free Software Foundation.

See software documentation for more informations.

Location: /usr/local/bioinfo/src/MAKER
---------

Load binaries and environment:
------------------------------

-> Version v3.01.04

#Need Blast,Python-3.6.3,RepeatMasker,SNAP,Exonerate
module load bioinfo/NCBI_Blast/2.2.26 devel/python/Python-3.6.3 bioinfo/RepeatMasker/4.1.5 bioinfo/SNAP/4ad1e95 bioinfo/Exonerate/2.2.0

module load bioinfo/MAKER/3.01.04

-> Version v3.01.04-MPI (with local perl version,recompiled for maker, and RepeatMasker-4.0.7 installed in /usr/local/bioinfo/src/MAKER/maker-3.01.04-MPI/)


#Need Blast,Python-3.6.3,RepeatMasker,SNAP,Exonerate
module load bioinfo/NCBI_Blast/2.2.26 devel/python/Python-3.6.3 bioinfo/RepeatMasker/4.1.5 bioinfo/SNAP/4ad1e95 bioinfo/Exonerate/2.2.0

#Need MPI
module load mpi/openmpi/4.1.4

module load bioinfo/MAKER/3.01.04-MPI


Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/MAKER/example_on_cluster

To submit: sbatch test_maker-3.01.04.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.