SOFT : MeroX
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Site du soft: https://www.stavrox.com/
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LICENSE:
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Free. See https://stavrox.com/license.htm

See software documentation for more informations.

Location: /usr/local/bioinfo/src/MeroX
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Load binaries and environment:
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-> Version v2.0.1.4

module load bioinfo/MeroX/2.0.1.4


To use in CLI mode see example.

java -Xmx4g -jar $MEROX_HOME/MeroX2.0.jar ...

#Warning! By default all cpu are used on the node. Don't forget to reserve all node with --cpus-per-task 128 option for Slurm or active -M option of Merox command to disable multi-threads

To run in GUI mode:

- on calcul node:

Need to be in graphical mode connection to genobioinfo server:
ssh -X <login>@genobioinfo.toulouse.inrae.fr

Connect in graphical mode on (see FAQ: http://bioinfo.genotoul.fr/index.php/faq/job_submission_faq/ -> Which commands can I use to submit my job? See "INTERACTIVE with X11 forwarding" section)
$ srun --x11 --mem=4G --pty bash
$ module load bioinfo/MeroX/2.0.1.4
$ java -jar $MEROX_HOME/MeroX2.0.jar


- On OOD Linux Desktop: https://geno-ood-1.toulouse.inrae.fr/ (see help : https://vm-genoword.toulouse.inrae.fr/FAQ/tutorials/ood-linux/)

Example directory for use on cluster:
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/usr/local/bioinfo/src/MeroX/example_on_cluster

To submit: sbatch test_MeroX-v2.0.1.4.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.