SOFT : Merqury
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Site du soft: https://github.com/marbl/merqury
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LICENSE:
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See https://github.com/marbl/merqury/blob/master/LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Merqury
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Load binaries and environment:
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-> Version 1ef2c36

#Need R, gcc-12.2.0, meryl, bedtools, samtools
module load statistics/R/4.2.2 compilers/gcc/12.2.0 bioinfo/Meryl/1b9294d bioinfo/bedtools/2.27.1 bioinfo/samtools/1.14

module load bioinfo/Merqury/1ef2c36

$MERQURY/merqury.sh ...

#Warning! By default all cpu are used on the node. To limit threads use export OMP_NUM_THREADS=<nb cpus> and don't forget to adjust to --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Merqury/example_on_cluster

sbatch test_merqury-1ef2c36.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.