SOFT : NanoCLUST
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Site du soft: https://github.com/genomicsITER/NanoCLUST
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/NanoCLUST
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Load binaries and environment:
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-> Version eb6a2c8

#Need Nextflow, conda
module load bioinfo/Nextflow/21.10.6 devel/Miniconda/Miniconda3

module load bioinfo/NanoCLUST/eb6a2c8

nextflow run $NANOCLUST_HOME/main.nf -profile conda ...
(no docker on cluster)


Some software default directory (ex: .nextflow, .conda, .beast, .ncbi, .R ...) are usually located at your home directory whose allocated space is very limited.
A simple solution consist in create (or move if it already exist) . directory in your work space and making a symbolic link to this
directory in your home
mkdir ~/work/.nextflow (or mv ~/.nextflow ~/work/)
ln -s ~/work/.nextflow  ~/.nextflow

Example directory for use on cluster:
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/usr/local/bioinfo/src/NanoCLUST/example_on_cluster

To submit: sbatch test_NanoCLUST-eb6a2c8.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.