SOFT : Openfold3
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Site du soft: https://github.com/aqlaboratory/openfold-3
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LICENSE:
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Apache-2.0 license

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Openfold3
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Load binaries and environment:
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-> Version v0.3.1

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Openfold3/0.3.1

To unload module, unload  in order:

module load unbioinfo/Openfold3/0.3.1
module unload devel/Miniforge/Miniforge3

Models parameters path: /usr/local/bioinfo/src/Openfold3/openfold-3-0.3.1/.openfold3

To use it: export OPENFOLD_CACHE=/usr/local/bioinfo/src/Openfold3/openfold-3-0.3.1/.openfold3

#Need GPU: to submit on gpuq, see FAQ: https://vm-genoword.toulouse.inrae.fr/FAQ/faq/job-submission/#how-to-use-gpu-node -> How to use GPU node

Example directory for use on cluster:
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/usr/local/bioinfo/src/Openfold3/example_on_cluster

To submit: sbatch test_openfold-3-0.3.1.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.