SOFT : OrthoFinder
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Site du soft: https://github.com/davidemms/OrthoFinder
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/OrthoFinder
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Load binaries and environment:
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-> Version v2.5.5

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/OrthoFinder/2.5.5

To unload module, unload  in order:

module unload bioinfo/OrthoFinder/2.5.5
module unload devel/Miniconda/Miniconda3

Warning! By default 128 threads are used on the node. Don't forget to adjust -t and -a  option of orthofinder command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/OrthoFinder/example_on_cluster

To submit: sbatch test_OrthoFinder-v2.5.5.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.


-> Version 3.0.1
  module load devel/python/Python-3.11.1
  module load bioinfo/OrthoFinder/3.0.1b1