SOFT : Pychopper
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Site du soft: https://github.com/epi2me-labs/pychopper
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LICENSE:
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Oxford Nanopore Technologies PLC. Public License Version 1.0. See  https://github.com/epi2me-labs/pychopper?tab=License-1-ov-file#readme

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Pychopper
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Load binaries and environment:
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-> Version v2.7.10

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Pychopper/2.7.10

To unload module, unload  in order:

module unload bioinfo/Pychopper/2.7.10
module unload devel/Miniforge/Miniforge3

Warning! By default  8 cpus are used on the node. Don't forget to adjust t option of pychopper command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Pychopper/example_on_cluster

To submit: sbatch test_pychopper-v2.7.10.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.