SOFT : QIIME
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Site du soft: https://qiime2.org
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LICENSE:
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BSD-3-Clause

See software documentation for more informations.

Location: /usr/local/bioinfo/src/QIIME
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Load binaries and environment:
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-> Version v2-2023.7

module load devel/Miniconda/Miniconda3-init
conda activate QIIME2-v2023.7_env

WARNINGS:
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While QIIME Conda environment is activated, python will be the one of QIIME (3.8.15), 
as well as for some other required software installed within this environment.
To exit from this conda environement: conda deactivate
... but now you are in the base conda environment of Miniconda3 (python 3.10.10)
To exit from this conda environment, again: conda deactivate
... Miniconda3 module is still loaded, to unload it: module unload devel/Miniconda/Miniconda3-init
... some functions and environment variables are still declared, but will not be problematic
    (see: export -p|grep CONDA ; declare -f|grep conda)


or

module load devel/Miniconda/Miniconda3
module load bioinfo/QIIME/2023.7 

To unload module, unload  in order:

module unload bioinfo/QIIME/2023.7
module unload devel/Miniconda/Miniconda3

-> Version v2024.2-Amplicon

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/QIIME/2024.2-Amplicon

To unload module, unload  in order:

module unload bioinfo/QIIME/2024.2-Amplicon
module unload devel/Miniconda/Miniconda3

-> Version v2024.2-Shortgun

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/QIIME/2024.2-Shortgun

To unload module, unload  in order:

module unload bioinfo/QIIME/2024.2-Shortgun
module unload devel/Miniconda/Miniconda3


Example directory for use on cluster:
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/usr/local/bioinfo/src/QIIME/example_on_cluster

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.