SOFT : RGAugury
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Site du soft: https://bitbucket.org/yaanlpc/rgaugury
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LICENSE:
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GPL

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RGAugury
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Load binaries and environment:
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-> Version v2.2

#Need Java>11, Python3, interproscan-5.51-85.0, Blast+, Hmmer3.2.1, CVIT, PfamScan
module load devel/java/17.0.6 devel/python/Python-3.11.1 bioinfo/InterProScan/5.51-85.0  bioinfo/NCBI_Blast+/2.15.0+ bioinfo/HMMER/3.2.1 bioinfo/CVIT/1.2.1 bioinfo/PfamScan/1.6

module load bioinfo/RGAugury/2.2

Warning! By default 2 cpu are used on the node. Don't forget to adjust -c option of RGAugury.pl command and --cpus-per-task option for Slurm.

Default PFAMDB is set by module (/work/bank2/ebi/pfam/current/hmm/)

Example directory for use on cluster:
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/usr/local/bioinfo/src/RGAugury/example_on_cluster

To submit: sbatch test_rgaugury-v2.2.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.