SOFT : ROSE
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Site du soft: http://younglab.wi.mit.edu/super_enhancer_code.html
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LICENSE:
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MIT X11 LICENSE

See software documentation for more informations.

Location: /usr/local/bioinfo/src/ROSE
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Load binaries and environment:
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-> Version feb35cb

# Need at least Python 2.7.3, R 2.15.3, and SAMtools 0.1.18
module load devel/python/Python-2.7.18 statistics/R/4.2.2 bioinfo/samtools/0.1.19

module load bioinfo/ROSE/feb35cb

(annotation are here: /usr/local/bioinfo/src/ROSE/rose-feb35cb/annotation. Copy annotation in your working directory)

Example directory for use on cluster:
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/usr/local/bioinfo/src/ROSE/example_on_cluster

To submit: sbatch test_rose-feb35cb.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.