SOFT : RepeatScout
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Site du soft: https://github.com/Dfam-consortium/RepeatScout
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LICENSE:
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NC

See software documentation for more informations.

Location: /usr/local/bioinfo/src/RepeatScout
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Load binaries and environment:
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-> Version v1.0.5

#Need NSEG,TRF,Repeatmasker (and Python-3.6.3 for RepeatMasker)
module load bioinfo/NSEG/2000-06-20 bioinfo/TRF/4.09.1 devel/python/Python-3.6.3 bioinfo/RepeatMasker/4.1.5

module load bioinfo/RepeatScout/1.0.5

#Need TRF, NCBI-Blast+ 
module load bioinfo/TRF/4.09.1 bioinfo/NCBI_Blast+/2.10.0+

module load bioinfo/RepeatScout/1.0.7


Example directory for use on cluster:
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/usr/local/bioinfo/src/RepeatScout/example_on_cluster

To submit: sbatch test_RepeatScout-1.0.5.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.