SOFT : SMRTLink
------
Site du soft: https://www.pacb.com/support/software-downloads/
-------------

LICENSE:
--------

For Research Use Only.
Please refer to the applicable Pacific Biosciences Terms and Conditions of Sale and the applicable license terms at
http://www.pacb.com/legal-and-trademarks/product-license-and-use-restrictions

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SMRTLink
---------

Load binaries and environment:
------------------------------

-> Version v11.0

module load bioinfo/SMRTLink/11.0

-> Version v12.0

module load bioinfo/SMRTLink/12.0

-> Version v13.1

module load bioinfo/SMRTLink/13.1

-> Version v25.2

module load bioinfo/SMRTLink/25.2

Warning! Default cpu for ccs: all cpu on node. Don't forget to adjust -j option of ccs command and --cpus-per-task slurm option.

Example directory for use on cluster:
-------------------------------------

/usr/local/bioinfo/src/SMRTLink/example_on_cluster

To submit: sbatch test_SMRTLink-v12.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.