SOFT : SQANTI3
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Site du soft: https://github.com/ConesaLab/SQANTI3
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SQANTI3
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Load binaries and environment:
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-> Version v6.0.1

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/SQANTI3/6.0.1

To unload module, unload  in order:

module unload bioinfo/SQANTI3/6.0.1
module unload devel/Miniforge/Miniforge3

Warning! By default 10 cpus are used on the node. Don't forget to adjust -t option of squanti3 (or cpu parameter in config file)  command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/SQANTI3/example_on_cluster

To submit: sbatch test_SQANTI3-v6.0.1.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.