SOFT : Snakemake
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Site du soft: http://snakemake.readthedocs.io/
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Snakemake
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Load binaries and environment:
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-> Version v5.25.0

module load bioinfo/Snakemake/5.25.0

-> Version v6.5.1

module load bioinfo/Snakemake/6.5.1

-> Version v7.20.0

module load bioinfo/Snakemake/7.20.0

-> Version v7.32.4

With python-3.9.18 and PuLP-2.7.0 to answer to issues:

https://github.com/snakemake/snakemake/issues/2615 : "No substitute parameters for --cluster-config after v8.0"
https://github.com/snakemake/snakemake/issues/1952: "Snakemake incompatible with Python 3.11 due to ratelimiter dependency"
https://github.com/snakemake/snakemake/issues/2607: "AttributeError: module 'pulp' has no attribute 'list_solvers'"


module load bioinfo/Snakemake/7.32.4

-> Version v8.3.1

module load bioinfo/Snakemake/8.3.1

-> Version v8.20.3

module load bioinfo/Snakemake/8.20.3


Example directory for use on cluster:
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/usr/local/bioinfo/src/Snakemake/example_on_cluster

To submit: sbatch test_snakemake-v7.20.0.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.