SOFT : Sniffles
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Site du soft: https://github.com/fritzsedlazeck/Sniffles
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Sniffles
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Load binaries and environment:
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-> Version v2.2

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/Sniffles/2.2

To unload module, unload  in order:

module unload bioinfo/Sniffles/2.2
module unload devel/Miniconda/Miniconda3

-> Version v2.6.1

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Sniffles/2.6.1

To unload module, unload  in order:

module unload bioinfo/Sniffles/2.6.1
module unload devel/Miniforge/Miniforge3


Warning! By default 4  cpu are used on the node. Don't forget to adjust --threads option of sniffles command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/Sniffles/example_on_cluster

To submit: sbatch test_Sniffles-v2.2.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.