SOFT : SortMeRNA
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Site du soft: https://github.com/sortmerna/sortmerna
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SortMeRNA
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Load binaries and environment:
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-> Version v4.3.6

module load bioinfo/SortMeRNA/4.3.6

-> Version v4.3.7

#Need gcc-11.2.0
module load compilers/gcc/11.2.0

module load bioinfo/SortMeRNA/4.3.7

-> Version v6.0.2

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/SortMeRNA/6.0.2

To unload module, unload  in order:

module unload bioinfo/SortMeRNA/6.0.2
module unload devel/Miniforge/Miniforge3


Warning! By default 2 cpu are used on the node. Don't forget to adjust --threads option of sortmerna command and --cpus-per-task for Slurm


Example directory for use on cluster:
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/usr/local/bioinfo/src/SortMeRNA/example_on_cluster

To submit: sbatch test_sortmerna-4.3.6.sh or cd sortmerna-4.3.7 && sbatch test_sortmerna-4.3.7.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.