SOFT : SpaceRanger
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Site du soft: https://www.10xgenomics.com/support/software/space-ranger/latest
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LICENSE:
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10x Genomics End User Software License Agreement:
https://support.10xgenomics.com/genome-exome/software/downloads/latest

See software documentation for more informations.

Location: /usr/local/bioinfo/src/SpaceRanger
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Load binaries and environment:
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-> Version v2.1.1

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/SpaceRanger/2.1.1

-> Version v3.1.2

module load bioinfo/bcl2fastq/2.20.0

module load bioinfo/SpaceRanger/3.1.2


Example directory for use on cluster:
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/usr/local/bioinfo/src/SpaceRanger/example_on_cluster

To submit: sbatch test_spaceranger-2.1.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.