SOFT : Tiberius
------

Site du soft: https://github.com/Gaius-Augustus/Tiberius
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/Tiberius
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Load binaries and environment:
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-> Version baaafd7

#Need Miniconda
module load devel/Miniconda/Miniconda3
module load bioinfo/Tiberius/baaafd7

To unload module, unload  in order:

module unload bioinfo/Tiberius/baaafd7
module unload devel/Miniconda/Miniconda3

Model weights can be found in /usr/local/bioinfo/src/Tiberius/Tiberius-baaafd7/model_weights/tiberius_weights (--model /usr/local/bioinfo/src/Tiberius/Tiberius-baaafd7/model_weights/tiberius_weights )

-> Version 1.1.7

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Tiberius/1.1.7

To unload module, unload  in order:

module unload bioinfo/Tiberius/1.1.7
module unload devel/Miniforge/Miniforge3

Use --seq_len to ≤ 259992 (because of tensorflow 2.14)

-> Version 1.1.8

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Tiberius/1.1.8

To unload module, unload  in order:

module unload bioinfo/Tiberius/1.1.8
module unload devel/Miniforge/Miniforge3

Use --seq_len to ≤ 259992 (because of tensorflow 2.17)

-> Version 2.0.3

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/Tiberius/2.0.3

To unload module, unload  in order:

module unload bioinfo/Tiberius/2.0.3
module unload devel/Miniforge/Miniforge3

Use --seq_len to ≤ 259992 (because of tensorflow 2.17)


#If need GPU. To submit on gpuq, see FAQ:  https://vm-genoword.toulouse.inrae.fr/FAQ/faq/job-submission/#how-to-use-gpu-node -> How to use GPU node


Example directory for use on cluster:
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/usr/local/bioinfo/src/Tiberius/example_on_cluster 

To submit: sbatch test_Tiberius-baaafd7.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.