SOFT : VirSorter2
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Site du soft: https://github.com/jiarong/VirSorter2
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LICENSE:
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GPL-v2

See software documentation for more informations.

Location: /usr/local/bioinfo/src/VirSorter2
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Load binaries and environment:
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-> Version v2.2.4

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/VirSorter2/2.2.4

To unload module, unload  in order:

module unload bioinfo/VirSorter2/2.2.4
module unload devel/Miniforge/Miniforge3

You have to install the databanks in your directory (need write permissions):
# run setup
virsorter setup -d /work/user/username/db -j 4

$ virsorter run --help
  -d, --db-dir PATH             database directory, default to the --db-dir

Example directory for use on cluster:
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/usr/local/bioinfo/src/VirSorter2/example_on_cluster

To submit: sbatch test_VirSorter2-v2.2.4.sh

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.