SOFT : biastools
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Site du soft: https://github.com/maojanlin/biastools
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/biastools
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Load binaries and environment:
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-> Version v0.3.1

#Need samtools , bcftools (with tabix), bedtools, bowtie2, bwa, SeqAn (with mason_simulator)
module load bioinfo/samtools/1.14 bioinfo/Bcftools/1.9 bioinfo/bedtools/2.30.0 bioinfo/bowtie/2.5.1 bioinfo/bwa/0.7.17 bioinfo/SeqAn/2.4.0

module load bioinfo/biastools/0.3.1

Warning! By default all cpu are used on the node. Don't forget to adjust -t option of biastools and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/biastools/example_on_cluster

To submit: sbatch test_biastools-v0.3.1.sh 

See software documentation and our FAQ (http://bioinfo.genotoul.fr/index.php/faq/) for more informations.