SOFT : gapseq
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Site du soft: https://github.com/jotech/gapseq
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LICENSE:
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GPL-v3

See software documentation for more informations.

Location: /usr/local/bioinfo/src/gapseq
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Load binaries and environment:
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-> Version v2.0.1

#Need Miniforge
module load devel/Miniforge/Miniforge3
module load bioinfo/gapseq/2.0.1

To unload module, unload  in order:

module unload bioinfo/gapseq/2.0.1
module unload devel/Miniforge/Miniforge3


Warning! By default all cpu are used on the node. Don't forget to adjust -K option of gapseq (doall -K) and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/gapseq/example_on_cluster 

To submit: sbatch test_gapseq-v2.0.1.sh 

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.