SOFT : inStrain
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Site du soft: https://github.com/MrOlm/inStrain
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LICENSE:
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MIT

See software documentation for more informations.

Location: /usr/local/bioinfo/src/inStrain
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Load binaries and environment:
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-> Version v1.10.0

#Need Samtools
module load bioinfo/samtools/1.23

module load bioinfo/inStrain/1.10.0

Warning! By default 6 cpu are used on the node. Don't forget to adjust -p option of inStrain command and --cpus-per-task option for Slurm.

Example directory for use on cluster:
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/usr/local/bioinfo/src/inStrain/example_on_cluster

To submit: sbatch test_inStrain-1.10.0.sh

See software documentation and our FAQ (https://vm-genoword.toulouse.inrae.fr/FAQ) for more informations.